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Convoluted Case - What are my chances?

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School: Minor Ivy
Major: BS Mathematical Physics (4 year combined masters in physics as well)

Gpa(s):
3.47 gpa
3.5 Science gpa (mostly upper division / grad if that counts for anything)
upward trend (first two years = 3.3 for both; junior year looking like its going to be 4.0 for both semesters)
*see extenuating circumstances below

Mcat:
521 (132/129/131/129)

Research:
2+ years of lab (when I graduate - 1 year of lab when I submit primary)
Only 1 publication (pending) though it will be...

Convoluted Case - What are my chances?

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